Section Gene Symbol Age Orientation Objective Veracity Veracity Support
01 sine oculis-related homeobox 3 Six3 P7 Sagittal 10X Confirmed
  • Matches In Situ Data
  • Supported by Literature
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    BX BAC Address marker
    BX2506 RP24-68F22 EGFP
    Other cross-sections of this brain:GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    01    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    02    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    03    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    04    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    05    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    06    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    07    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    08    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    09    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    10    		GENSAT Brain Atlas, expression of gene Six3 in mouse age P7, brightfield image
    11    		(thumbnails not to scale)
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  • Founder Line: OF35
  • See all MMRRC strains for : Six3
  • Get this mouse from MMRRC: STOCK Tg(Six3-EGFP)OF35Gsat/Mmucd: Details, Order
  • Get this BAC Clone from CHORI: BX2506
  • UCSC Genome Browser for this BAC Address: RP24-68F22
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    Comment on this Gene:
    The BAC data is very incomplete. Correct expression is observed in the optic tract, retina and hypothalamus. However, the BAC misses important expression sites, such as the reticular thalamic nucleus and inferior colliculus. In the reticular thalamic nucleus, scattered glial cells are stained in BAC data. The BGEM in situ data also show weak Six3 expression in the striatum and SNR, which is absent in the BAC data.


    Other image sets for Six3
    age orientation Acquisition technique Founder Line Batch
    adult Horizontal brightfield OF35 2 images
    adult Sagittal brightfield OF35 10 images
    P7 Horizontal brightfield OF35 3 images
    P7 Sagittal brightfield OF35 11 images

    BGEM Probe Related ISH images
    Six3 1136

    Supporting literature:
    PubMed ID
    8575305
    14522868


    Veracity definition
    Confirmed Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
    To Be Confirmed To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
    Anomalous Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

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