Section Gene Symbol Age Orientation Objective Veracity Veracity Support p032 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 Slc6a4 adult Coronal 10X Confirmed Matches In Situ Data Supported by Literature

BX BAC Address marker BX894 RP24-335M24 Cre

Other cross-sections of this brain: p018 p021 p026 p032 p038 p040 p044 p050 p053 p057 p064 p071 p075 p076 p079 p084 (thumbnails not to scale)

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Add this image to your album Download this image at the scale shown below. Founder Line: ET127 See all MMRRC strains for : Slc6a4 Get this mouse from MMRRC: STOCK Tg(Slc6a4-cre)ET127Gsat/Mmucd: Details, Order Get this BAC Clone from CHORI: BX894 UCSC Genome Browser for this BAC Address: RP24-335M24

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Cre expression pattern: matches adult (serotonin neurons) and developmental (neocortex layer 6) gene expression

Gene Expression Annotations for this image

structure	Expression Level	Expression Pattern	Cell types	Subtypes
Cerebral cortex	moderate to strong signal	region-specific and scattered	neuron
Piriform cortex	undetectable	ND
Caudate Putamen	moderate to strong signal	region-specific and scattered	neuron
Septum	undetectable	ND
Basal Forebrain	moderate to strong signal	scattered	neuron
Hypothalamus	moderate to strong signal	region-specific and scattered	neuron

Other image sets for Slc6a4

age	orientation	Acquisition technique	Founder Line	Batch
adult	Coronal	brightfield	ET127	16 images
adult	Coronal	brightfield	ET33	24 images
adult	Coronal	brightfield	EZ13	69 images
adult	Coronal	brightfield	EZ8	67 images
adult	Horizontal	brightfield	JP55	3 images
adult	Sagittal	brightfield	JP55	10 images
P7	Horizontal	brightfield	JP55	3 images
P7	Sagittal	brightfield	JP55	11 images
E15.5	Horizontal	brightfield	JP55	3 images
E15.5	Sagittal	brightfield	JP55	10 images

BGEM Probe	Related ISH images
Slc6a4	373

Supporting literature:

PubMed ID
9459551
8121638
9037532
9826275

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Veracity	definition
Confirmed	Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
To Be Confirmed	To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
Anomalous	Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

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