Structure Gene Symbol Age Orientation Objective Veracity Veracity Support
Cerebral cortex potassium inwardly-rectifying channel, subfamily J, member 5 Kcnj5 P7 Sagittal 63X Confirmed
  • Multiple Lines Match
  • Supported by Literature
    		•
    BX BAC Address marker
    BX99 RP23-111B14 EGFP
    Other structures in this brain:GENSAT Brain Atlas, expression of gene Kcnj5 in mouse age P7, confocal image
    Cex1    		GENSAT Brain Atlas, expression of gene Kcnj5 in mouse age P7, confocal image
    Cex2    		GENSAT Brain Atlas, expression of gene Kcnj5 in mouse age P7, confocal image
    Hip1    		GENSAT Brain Atlas, expression of gene Kcnj5 in mouse age P7, confocal image
    Hyp1    		GENSAT Brain Atlas, expression of gene Kcnj5 in mouse age P7, confocal image
    Hyp2    		GENSAT Brain Atlas, expression of gene Kcnj5 in mouse age P7, confocal image
    OTH    		GENSAT Brain Atlas, expression of gene Kcnj5 in mouse age P7, confocal image
    PON
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  • Founder Line: AN101
  • Get this BAC Clone from CHORI: BX99
  • UCSC Genome Browser for this BAC Address: RP23-111B14
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  • Read gene expression annotations for this image
  • View other image sets for Kcnj5
    • GENSAT Mouse Brain Atlas, expression of gene Kcnj5 in the Cerebral cortex of P7 mouse.
    Comment on this Gene:
    6 BAC lines are identical at P7 (three of them identical at E15-5 and adult too). Our BAC data matches the literature in general. In cortex, layer VI neurons express EGFP transgene at P7, then the expression declines to undetectable level in adult. This pattern is consistent with the published data. But there are a few disagreements: 1. Our BAC also labels layer1 of the cerebral cortex, which is not documented in the literature. 2. Strong expression in claustrum is not seen in our data. 3. At E15-5, our BAC stains a few more structures in brain other than the ventromedial hypothalamic nucleus.

    Gene Expression Annotations for this image
    structureExpression LevelExpression PatternCell typesSubtypes
    Cerebral cortexmoderate to strong signalregion-specific
  • neuron
  • interneuron


    • Other image sets for Kcnj5
    age orientation Acquisition technique Founder Line Batch
    adult Horizontal brightfield BZ49 3 images
    adult Horizontal confocal BZ49 1 images
    adult Sagittal brightfield BZ49 10 images
    adult Sagittal confocal BZ49 8 images
    P7 Horizontal brightfield BZ49 3 images
    P7 Sagittal brightfield BZ49 11 images
    P7 Sagittal confocal AN101 7 images
    E15.5 Horizontal brightfield BZ73 3 images
    E15.5 Sagittal brightfield BZ73 10 images
    E15.5 Sagittal confocal BZ49 4 images
    E15.5 Sagittal confocal AN101 1 images

    BGEM Probe Related ISH images
    Kcnj5 308

    Supporting literature:
    PubMed ID
    10908597
    8642402
    9044369
    9532576


    Veracity definition
    Confirmed Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
    To Be Confirmed To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
    Anomalous Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

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