Section Gene Symbol Age Orientation Objective Veracity Veracity Support 03 isocitrate dehydrogenase 3 (NAD+) alpha Idh3a adult Sagittal 10X Confirmed Multiple Lines Match Matches In Situ Data

BX BAC Address marker BX1628 RP23-342H12 EGFP

Other cross-sections of this brain: 01 02 03 04 05 06 07 08 09 10 (thumbnails not to scale)

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Add this image to your album Download this image at the scale shown below. Founder Line: IF220 See all MMRRC strains for : Idh3a Get this mouse from MMRRC: STOCK Tg(Idh3a-EGFP)IF220Gsat/Mmucd: Details, Order Get this BAC Clone from CHORI: BX1628 UCSC Genome Browser for this BAC Address: RP23-342H12

Read gene expression annotations for this image View other image sets for Idh3a

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Comment on this Gene: No CNS expression literature found. The BAC data is reproducible and grossly matches Allen in situ data. By epifluorescence, the EGFP transgene is highly expressed in cortex, MOB, thalamus and cerebellar Purkinje cells.

Gene Expression Annotations for this image

structure	Expression Level	Expression Pattern	Cell types	Subtypes
Cerebral cortex	moderate to strong signal	region-specific and scattered	neuron glial cell
Hippocampus	moderate to strong signal	region-specific and scattered	neuron glial cell
Caudate Putamen	weak signal	scattered	neuron glial cell
Amygdala	moderate to strong signal	widely expressed	neuron glial cell
Thalamus	moderate to strong signal	widely expressed	neuron glial cell
Pons	moderate to strong signal	widely expressed	neuron glial cell
Medulla	moderate to strong signal	widely expressed	neuron glial cell
Cerebellum	moderate to strong signal	region-specific	neuron glial cell	Purkinje cell

Other image sets for Idh3a

age	orientation	Acquisition technique	Founder Line	Batch
adult	Horizontal	brightfield	IF220	3 images
adult	Horizontal	confocal	IF220	1 images
adult	Sagittal	brightfield	IF220	10 images
adult	Sagittal	confocal	IF220	4 images
P7	Horizontal	brightfield	IF220	3 images
P7	Horizontal	confocal	IF220	1 images
P7	Sagittal	brightfield	IF220	11 images
P7	Sagittal	confocal	IF220	5 images
E15.5	Horizontal	brightfield	IF220	3 images
E15.5	Horizontal	confocal	IF220	1 images
E15.5	Horizontal	confocal	IF220	1 images
E15.5	Sagittal	brightfield	IF220	10 images
E15.5	Sagittal	confocal	IF220	3 images
E15.5	Sagittal	confocal	IF220	2 images

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Veracity	definition
Confirmed	Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
To Be Confirmed	To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
Anomalous	Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

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