Section Gene Symbol Age Orientation Objective Veracity Veracity Support 03 calcium channel, voltage-dependent, gamma subunit 5 Cacng5 adult Sagittal 10X Confirmed Multiple Lines Match Matches In Situ Data

BX BAC Address marker BX1300 RP23-329L1 EGFP

Other cross-sections of this brain: 01 02 03 04 05 06 07 08 09 10 (thumbnails not to scale)

Double-click anywhere in the image below. Trouble? Visit help page.

Add this image to your album Download this image at the scale shown below. Founder Line: HM259 Get this BAC Clone from CHORI: BX1300 UCSC Genome Browser for this BAC Address: RP23-329L1

Read gene expression annotations for this image View other image sets for Cacng5

Detail Scale: 1:1 1:2 1:4 1:8 Hide atlas image

Instructions Click once, somewhere in the image. A new window will pop up displaying selected detail. There is no need to double click. If you change detail scale, new detail will load automatically.

Comment on this Gene: No CNS expression literature found. The cited paper reports that by RT-PCR, the gene is expressed in frontal cortex, hippocampus and cerebellum in human brain. The BAC data is reproducible and matches BGEM in situ data well. However, in adult cerebellum, Bergmann glia is primarily labeled in the BAC data instead of Purkinje neurons seen at P7. The adult in situ data from Allen confirms Bergmann glia expression.

Gene Expression Annotations for this image

structure	Expression Level	Expression Pattern	Cell types	Subtypes
Cerebral cortex	moderate to strong signal	scattered	neuron	fibers
Hippocampus	moderate to strong signal	region-specific	neuron	CA2 pyramidal cell fibers
Caudate Putamen	moderate to strong signal	region-specific and scattered	neuron	fibers
Amygdala	moderate to strong signal	region-specific	neuron	fibers
Thalamus	moderate to strong signal	region-specific
Cerebellum	moderate to strong signal	region-specific	glial cell	Bergmann glia

Other image sets for Cacng5

age	orientation	Acquisition technique	Founder Line	Batch
adult	Horizontal	brightfield	HM259	3 images
adult	Sagittal	brightfield	HM259	10 images
adult	Sagittal	confocal	HM259	3 images
P7	Sagittal	brightfield	HM259	11 images
P7	Sagittal	confocal	HM259	7 images
E15.5	Horizontal	brightfield	HM259	3 images
E15.5	Sagittal	confocal	HM259	1 images

BGEM Probe	Related ISH images
Cacng5	1884

Supporting literature:

PubMed ID
11170751

---

Veracity	definition
Confirmed	Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
To Be Confirmed	To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
Anomalous	Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

Top

00:00:01.421