Section Gene Symbol Age Orientation Objective Veracity Veracity Support 01 early growth response 1 Egr1 P7 Sagittal 10X Confirmed Multiple Lines Match Matches In Situ Data

BX BAC Address marker BX1225 RP23-108C3 EGFP

Other cross-sections of this brain: 01 02 03 04 05 06 07 08 09 10 11 (thumbnails not to scale)

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Add this image to your album Download this image at the scale shown below. Founder Line: GO90 See all MMRRC strains for : Egr1 Get this mouse from MMRRC: STOCK Tg(Egr1-EGFP)GO90Gsat/Mmucd: Details, Order Get this BAC Clone from CHORI: BX1225 UCSC Genome Browser for this BAC Address: RP23-108C3

Read gene expression annotations for this image View other image sets for Egr1

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Comment on this Gene: Many expression references. But almost all of them reported induced expression of Egr1 in various brain regions after certain stimuli, not endogenous Egr1 mRNA distribution. The mostly studied brain regions include caudate putamen, neocortex, forebrain and hippocampus. Three BAC lines are identical at P7. The BAC expresses in both neurons and glia. The overall expression pattern agrees with BGEM in situ data and the literature.

Gene Expression Annotations for this image

structure	Expression Level	Expression Pattern	Cell types	Subtypes
Cerebral cortex	moderate to strong signal	scattered	glial cell
Piriform cortex	moderate to strong signal	region-specific and scattered	neuron glial cell
Entorhinal Cortex	moderate to strong signal	scattered	glial cell
Hippocampus	moderate to strong signal	scattered	glial cell
Caudate Putamen	moderate to strong signal	scattered	glial cell
Amygdala	moderate to strong signal	region-specific and scattered	neuron glial cell
Cerebellum	moderate to strong signal	scattered	neuron glial cell

Other image sets for Egr1

age	orientation	Acquisition technique	Founder Line	Batch
adult	Horizontal	brightfield	GO90	3 images
adult	Sagittal	brightfield	GO90	10 images
P7	Horizontal	brightfield	GO90	3 images
P7	Sagittal	brightfield	GO90	11 images
P7	Sagittal	confocal	GO90	8 images
E15.5	Horizontal	brightfield	GO90	3 images
E15.5	Horizontal	confocal	GO90	1 images
E15.5	Sagittal	brightfield	GO90	10 images

BGEM Probe	Related ISH images
Egr1	2360

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Veracity	definition
Confirmed	Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
To Be Confirmed	To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
Anomalous	Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

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