Section Gene Symbol Age Orientation Objective Veracity Veracity Support 07 vimentin Vim adult Sagittal 10X To Be Confirmed

BX BAC Address marker BX1199 RP23-185P20 EGFP

Other cross-sections of this brain: 01 02 03 04 05 06 07 08 09 10 (thumbnails not to scale)

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Add this image to your album Download this image at the scale shown below. Founder Line: GM158 See all MMRRC strains for : Vim Get this mouse from MMRRC: STOCK Tg(Vim-EGFP)GM158Gsat/Mmucd: Details, Order Get this BAC Clone from CHORI: BX1199 UCSC Genome Browser for this BAC Address: RP23-185P20

Read gene expression annotations for this image View other image sets for Vim

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Comment on this Gene: Many references, but no detailed expression literature. Vim is a known marker for glial cells. The BAC expresses in both neurons and glia at P7. The cerebellar expression is correct. However, level of expression is greatly decreased in adult cerebellum. Only a subset of the Bergmann glial cells labeled. The overall expression pattern in adult BAC mice is consistent with the in situ data from Allen database.

Gene Expression Annotations for this image

structure	Expression Level	Expression Pattern	Cell types	Subtypes
Olfactory Bulb	moderate to strong signal	region-specific	glial cell vascular cell	fibers
Cerebral cortex	moderate to strong signal	scattered	neuron vascular cell	interneuron fibers
Piriform cortex	weak signal	scattered	neuron vascular cell	fibers
Hippocampus	weak signal	region-specific and scattered	neuron vascular cell
Caudate Putamen	weak signal	scattered	vascular cell
Ventral striatum	weak signal	region-specific		fibers
Thalamus	weak signal	scattered	vascular cell
Hypothalamus	moderate to strong signal	region-specific and scattered	neuron vascular cell	fibers
Midbrain	weak signal	scattered	vascular cell
Pons	weak signal	scattered	neuron vascular cell
Medulla	weak signal	region-specific and scattered	neuron vascular cell
Cerebellum	moderate to strong signal	region-specific and scattered	glial cell vascular cell	Bergmann glia
other: choroid plexus	moderate to strong signal	ND
Olfactory nerve layer	moderate to strong signal	ND

Other image sets for Vim

age	orientation	Acquisition technique	Founder Line	Batch
adult	Horizontal	brightfield	GM158	3 images
adult	Sagittal	brightfield	GM158	10 images
P7	Horizontal	brightfield	GM158	3 images
P7	Horizontal	confocal	GM158	2 images
P7	Sagittal	brightfield	GM158	11 images
P7	Sagittal	confocal	GM158	11 images
E15.5	Horizontal	brightfield	GM158	3 images
E15.5	Horizontal	confocal	GM158	1 images
E15.5	Sagittal	brightfield	GM158	10 images
E15.5	Sagittal	confocal	GM158	7 images

BGEM Probe	Related ISH images
Vim	4018

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Veracity	definition
Confirmed	Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
To Be Confirmed	To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
Anomalous	Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

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