Structure Gene Symbol Age Orientation Objective Veracity Veracity Support
Amygdala paired box gene 6 Pax6 P7 Sagittal 25X Confirmed
  • Multiple Lines Match
  • Matches In Situ Data
  • Supported by Literature
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    BX BAC Address marker
    BX456 RP23-431C3 EGFP
    Other structures in this brain:GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    AMY    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    AON    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    CER    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    CEX    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    CEX01    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    CPU    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    MID    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    OLF    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    OTH    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    OTH01    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    PON    		GENSAT Brain Atlas, expression of gene Pax6 in mouse age P7, confocal image
    SEP
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  • Founder Line: BV100
  • See all MMRRC strains for : Pax6
  • Get this mouse from MMRRC: STOCK Tg(Pax6-EGFP)BV100Gsat/Mmnc: Details, Order
  • Get this BAC Clone from CHORI: BX456
  • UCSC Genome Browser for this BAC Address: RP23-431C3
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  • Read gene expression annotations for this image
  • View other image sets for Pax6
    • GENSAT Mouse Brain Atlas, expression of gene Pax6 in the Amygdala of P7 mouse.
    Comment on this Gene:
    Two BAC lines have matching expression at P7. Our BAC data grossly matches the literature and the in situ data from BGEM and Genepaint.org. But there are a few discrepancies: 1. Scattered glial cells are reproducibly stained in the hindbrain in two different targeting events. 2. Little or no expression in hippocampus in BAC mice at P7 and E15-5, compared with the in situ data.

    Gene Expression Annotations for this image
    structureExpression LevelExpression PatternCell typesSubtypes
    Amygdalamoderate to strong signalregion-specific and scattered
  • neuron
  • glial cell
  • not clear


    • Other image sets for Pax6
    age orientation Acquisition technique Founder Line Batch
    adult Horizontal brightfield BV100 3 images
    adult Horizontal confocal BV100 1 images
    adult Sagittal brightfield BV100 10 images
    adult Sagittal confocal BV100 1 images
    adult Sagittal confocal BV100 8 images
    P7 Horizontal brightfield BV100 3 images
    P7 Horizontal confocal BV100 2 images
    P7 Sagittal brightfield BV100 11 images
    P7 Sagittal confocal BV98 2 images
    P7 Sagittal confocal BV100 1 images
    P7 Sagittal confocal BV100 12 images
    E15.5 Horizontal brightfield BV98 3 images
    E15.5 Sagittal brightfield BV98 10 images

    BGEM Probe Related ISH images
    Pax6 294

    Supporting literature:
    PubMed ID
    9108373
    11050125
    8126546
    11688562


    Veracity definition
    Confirmed Confirmed refers to genes in which multiple lines yield matching datasets that agree with the available literature, or in which a single line has been produced that matches the available literature. In those cases where there a discrepancy between the literature and the reporter gene data (missing or additional sites of expression), this is noted in the database.
    To Be Confirmed To be confirmed refers to genes in which multiple lines produce matching datasets, but for which no independent expression data is available.
    Anomalous Anomalous refers to data collected from BAC reporter constructs producing different expression patterns in different lines (i.e. position effects).

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